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Home : Meetings : MGED2 : Agenda
The Second International Meeting on Microarray Data Standards, Annotations, Ontologies and Databases - MGED2
May 25 - 27, 2000
DKFZ and EMBL, Heidelberg, Germany
Wednesday, 24 May 2000 - venue DKFZ
Thursday, 25 May 2000 - venue DKFZ
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09:00-10:00 |
Registration |
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10:00-10:10 |
Opening |
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10:10-11:00 |
Keynote address:
The scientific publication of the future (Mike Eisen, Stanford) |
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11:00-11:20 |
Working group reports and goals:
Microarray data representation and annotation standards (Alvis Brazma, EMBL-EBI) [proposal] |
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11:20-11:40 |
Coffee |
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11:40-13:00 |
Working group reports and goals continued:
Chair - Alan Robinson
Microarray data representation in XML (Paul Spellman, Berkeley)
Ontologies for microarray experiment description (Mike Bittner, NHGRI)
Normalisation, quality control and cross-platform comparison (Frank Holstege, UMC-Utrecht)
Data queries and mining (Martin Vingron, DKFZ) |
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13:00-14:30 |
Lunch |
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14:30-15:50 |
Database projects
Chair - Terry Gaasterland
GEO (Alex Lash, NCBI)
DDBJ activity on microarray databases (Yoshio Tateno, DDBJ)
Current Database Developments at RZPD (Steffen Schulze-Kremer, RZPD, Berlin)
GeneX (Harry Mangalam, NCGR, Santa Fe)
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15:50-16:05 |
Coffee |
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16:05-17:25 |
Database projects (continued)
Chair - Wilhelm Ansorge
Stanford microarray database (Mike Cherry, Stanford)
GXD: integrated access to gene expression data from the laboratory mouse (Martin Ringwald, The Jackson Laboratory)
RAD (Chris Stoeckert, University of Pennsylvania)
Relational implementation of ArrayExpress (David Hancock, University of Manchester) |
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17:25-17:45 |
Coffee |
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17:45-19:05 |
Database projects (continued)
Chair - Joerg Hoheisel
ChipDB (Peter Young, MIT/Whitehead)
Integrated Databases for the high-throughput production and analysis of gene expression data (Mick Watson, GlaxoWellcome)
NCI database (Ron Taylor)
ArrayExpress status (Alan Robinson, EMBL-EBI)
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Friday, 26 May 2000 - venue DKFZ
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09:00-10:20 |
Databases, annotations, related projects
Chair - Paul Spellman
GeneExpress2000: Gene Logicīs new generation gene expression product (Victor Markowitz, Gene Logic)
Affymetrix database and integrated SW solutions (John Sowatsky, Affymetrix)
Integrating gene expression and genome annotation (Terry Gaasterland, Rockefeller University)
LifeExpress: Development of Incyte's Expression Database (Kurt Zingler)
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10:20-10:40 |
Coffee |
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10:40-12:00 |
Data normalisation, quality control
Chair - Frank Holstege
Data quality and normalisation issues (Roger Bumgarner, University of Washington, Seattle)
Showdown at the biotech corral: Panels of oligos or fragments from contigs? Microarray performance metrics (Rick Johnson, Incyte)
Normalisation and absolute expression measurements (Pascal Hingamp, Centre d'Immunologie de Marseille Luminy)
DNA microarrays - Quality control and Standardisation (Wilhelm Ansorge, EMBL)
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12:00-12:20 |
Coffee |
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12:20-13:20 |
Data normalisation, quality control
Chair - Mike Bittner
DNA microarrays - Quality control, Standardisation, Bioinformatics (Joerg Hoheisel, DKFZ)
Improving GeneChip Microarray Data Quality by Detecting and Adjusting for Scanner (PMT) Saturation (Jack Gerson, Gene Logic Inc.)
Data quality and its application to cDNA microarrays (Yidong Chen, NHGRI)
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13:20-14:30 |
Lunch |
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14:30-15:30 |
Poster session |
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15:30-16:10 |
Related initiatives
Chair - Alex Lash
OMG/LSR Overview and the new Gene Expression RFP (Scott Markel, NetGenics)
Goals and Objectives of the HESI Subcommittee on Application of Genomics to Mechanism-Based Risk Assessment (D. Gwyn Morgan and Denise Robinson SB and ILSI) |
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16:10-16:30 |
Coffee |
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16:30-19:00 |
Working groups meet |
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Saturday, 27 May 200 - venue EMBL
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09:00-09:50 |
Keynote talk (Anne-Marie Poustka, DKFZ) |
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Chair - Mike Cherry
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09:50-10:10 |
Coffee |
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10:10-11:00 |
Joint discussion between working groups |
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11:00-13:00 |
Working groups meet |
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13:00-14:00 |
Lunch |
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14:00-15:30 |
Final Plenary session - conclusions from the working groups
Chair - Alvis Brazma |
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